Posts
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PyDMD
Python Dynamic Mode Decomposition
- Description
- Dependencies and installation
- Examples and Tutorials
- Awards
- References
- Developers and contributors
- Funding
Tags: #python • dynamic-mode-decomposition • dmd
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bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
- Community developed: We welcome contributors with the goal of overcoming the biological, algorithmic and computational challenges that face individual developers working on complex pipelines in quickly changing research areas. See our users page for examples of bcbio-nextgen deployments, and the developer documentation for tips on contributing.
- Installation: A single installer script prepares all third party software, data libraries and system configuration files.
- Automated validation: Compare variant calls against common reference materials or sample specific SNP arrays to ensure call correctness. Incorporation of multiple approaches for alignment, preparation and variant calling enable unbiased comparisons of algorithms.
- Distributed: Focus on parallel analysis and scaling to handle large population studies and whole genome analysis. Runs on single multicore computers, in compute clusters using IPython parallel, or on the Amazon cloud. See the parallel documentation for full details.
- Multiple analysis algorithms: bcbio-nextgen provides configurable variant calling (small and copy number), RNA-seq, ATAC-seq, , BS-Seq, SC RNA-seq, and small RNA pipelines.
Tags: #python
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cipi
Install and manage your server like a pro! With Cipi you don’t need to be a Sys Admin to deploy and manage websites and PHP applications powered by cloud VPS.
Cipi is a Laravel based cloud server control panel that supports Digital Ocean, AWS, Vultr, Google Cloud, Linode, Azure and other VPS. It comes with nginx, Mysql, multi PHP-FPM versions, multi users, Supervisor, Composer, npm, free Let’s Encrypt certificates, Git deployment, backups, ffmpeg, fail2ban, Redis, API and with a simple graphical interface useful to manage Laravel, Codeigniter, Symfony, WordPress or other PHP applications. With Cipi you don’t need to be a Sys Admin to deploy and manage websites and PHP applications powered by cloud VPS.
Tags: #php • deployment • lemp
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gensim-data
Data repository for pretrained NLP models and NLP corpora.
Research datasets regularly disappear, change over time, become obsolete or come without a sane implementation to handle the data format reading and processing.
For this reason, Gensim launched its own dataset storage, committed to long-term support, a sane standardized usage API and focused on datasets for unstructured text processing (no images or audio). This Gensim-data repository serves as that storage.
There’s no need for you to use this repository directly. Instead, simply install Gensim and use its download API (see the Quickstart below). It will “talk” to this repository automagically.
💡 When you use the Gensim download API, all data is stored in your
~/gensim-datahome folder.Read more about the project rationale and design decisions in this article: New Download API for Pretrained NLP Models and Datasets.
Tags: #python • dataset • gensim
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require-css
A RequireJS CSS loader plugin to allow CSS requires and optimization
The use case for RequireCSS came out of a need to manage templates and their CSS together. The idea being that a CSS require can be a dependency of the code that dynamically renders a template. When writing a large dynamic application, with templates being rendered on the client-side, it can be beneficial to inject the CSS as templates are required instead of dumping all the CSS together separately. The added benefit of this is then being able to build the CSS naturally with the RequireJS optimizer, which also supports separate build layers as needed.
Tags: #javascript
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AndrOBD
Android OBD diagnostics with any ELM327 adapter
Tags: #java • obd • diagnostics
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similarity
similarity: Text similarity calculation Toolkit for Java. 文本相似度计算工具包，java编写，可用于文本相似度计算、情感分析等任务，开箱即用。
similarity, compute similarity score between text strings, Java written.
similarity，相似度计算工具包，可用于文本相似度计算、情感倾向分析等，Java编写。
similarity是由一系列算法组成的Java版相似度计算工具包，目标是传播自然语言处理中相似度计算方法。similarity具备工具实用、性能高效、架构清晰、语料时新、可自定义的特点。
Tags: #java • nlp • similarity
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rss-to-activitypub
An RSS to ActivityPub converter.
This is a server that lets users convert any RSS feed to an ActivityPub actor that can be followed by users on ActivityPub-compliant social networks like Mastodon.
This is based on my Express ActivityPub Server, a simple Node/Express server that supports a subset of ActivityPub.
As of the
v2.0.0release of this project, only users who are authenticated with a particular OAuth server can create feeds. Any federated user can still read the feeds. I implemented this because running this service in the open invited thousands of spammers to create feeds and overwhelm the service. With this new model, you can run this as an added bonus for people in a community like a Mastodon server, and as the person running it you are taking on only the moderation burden of the users you are already responsible for on your federated server.Tags: #javascript • activitypub • rss
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pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
The latest stable version of PyKEEN requires Python 3.8+. It can be downloaded and installed from PyPI with:
pip install pykeenThe latest version of PyKEEN can be installed directly from the source code on GitHub with:
pip install git+https://github.com/pykeen/pykeen.gitMore information about installation (e.g., development mode, Windows installation, Colab, Kaggle, extras) can be found in the installation documentation.
Tags: #python • knowledge-graph-embeddings • knowledge-graphs
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cookies
Signed and unsigned cookies based on Keygrip
This is a Node.js module available through the npm registry. Installation is done using the
npm installcommand:$ npm install cookiesTags: #javascript • cookies • nodejs
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